AustralieFrV1, Main, Exploration, bibRecord, 002118

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Identifieur interne : 002118 ( Main/Exploration ); précédent : 002117; suivant : 002119

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Auteurs : Gregory K. Farrant [France] ; Hugo Doré [France] ; Francisco M. Cornejo-Castillo [Espagne] ; Frédéric Partensky [France] ; Morgane Ratin [France] ; Martin Ostrowski [Australie] ; Frances D. Pitt [Royaume-Uni] ; Patrick Wincker [France] ; David J. Scanlan [Royaume-Uni] ; Daniele Iudicone [Italie] ; Silvia G. Acinas [Espagne] ; Laurence Garczarek [France]

Source :

Proceedings of the National Academy of Sciences of the United States of America [ 0027-8424 ] ; 2016.

RBID : PMC:4914166

Descripteurs français

KwdFr :
- Océan Atlantique, Océan Indien, Organismes aquatiques (), Organismes aquatiques (génétique), Prochlorococcus (), Prochlorococcus (génétique), Protéines bactériennes (génétique), Synechococcus (), Synechococcus (génétique), Variation génétique.
MESH :
- génétique : Organismes aquatiques, Prochlorococcus, Protéines bactériennes, Synechococcus.
- Océan Atlantique, Océan Indien, Organismes aquatiques, Prochlorococcus, Synechococcus, Variation génétique.

English descriptors

KwdEn :
- Aquatic Organisms (classification), Aquatic Organisms (genetics), Atlantic Ocean, Bacterial Proteins (genetics), Genetic Variation, Indian Ocean, Prochlorococcus (classification), Prochlorococcus (genetics), Synechococcus (classification), Synechococcus (genetics).
MESH :
- chemical , genetics : Bacterial Proteins.
- classification : Aquatic Organisms, Prochlorococcus, Synechococcus.
- genetics : Aquatic Organisms, Prochlorococcus, Synechococcus.
- Atlantic Ocean, Genetic Variation, Indian Ocean.

Abstract

Significance

Metagenomics has become an accessible approach to study complex microbial communities thanks to the advent of high-throughput sequencing technologies. However, molecular ecology studies often face interpretation issues, notably due to the lack of reliable reference databases for assigning reads to the correct taxa and use of fixed cutoffs to delineate taxonomic groups. Here, we considerably refined the phylogeography of marine picocyanobacteria, responsible for about 25% of global marine productivity, by recruiting reads targeting a high-resolution marker from Tara Oceans metagenomes. By clustering lineages based on their distribution patterns, we showed that there is significant diversity at a finer resolution than the currently defined “ecotypes,” a diversity that is tightly controlled by environmental cues.

Url:

http://www.ncbi.nlm.nih.gov/pmc/articles/PMC4914166

DOI: 10.1073/pnas.1524865113
PubMed: 27302952
PubMed Central: 4914166

Affiliations:

Australie, Espagne, France, Italie, Royaume-Uni

Le document en format XML

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<p>Metagenomics has become an accessible approach to study complex microbial communities thanks to the advent of high-throughput sequencing technologies. However, molecular ecology studies often face interpretation issues, notably due to the lack of reliable reference databases for assigning reads to the correct taxa and use of fixed cutoffs to delineate taxonomic groups. Here, we considerably refined the phylogeography of marine picocyanobacteria, responsible for about 25% of global marine productivity, by recruiting reads targeting a high-resolution marker from <italic>Tara</italic>
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Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

Delineating ecologically significant taxonomic units from global patterns of marine picocyanobacteria

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	Serveur d'exploration sur les relations entre la France et l'Australie
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